Tests & Demos:

GINI Index Compute Method BUMHMM & icSHAPE Result BUMHMM Computation Pipeline Compile C/C++ with GCC-7.2 icSHAPE data of 5S rRNA icSHAPE data of 28S rRNA

Protocols:

icSHAPE Pipeline Sentieon icSHAPE 建库流程 Genome Resource

Tools:

GAP: GTF Annotation Parser PsBL: Pan's Bioinformarics Library SHAPE-Tools: A toolset to calculate icSHAPE and smartSHAPE score faformat: format fasta file shape_plot: plot single or multi-aligned icSHAPE data paristools: tool sets to cluster/visualize PARIS data