Tests & Demos:
GINI Index Compute Method
BUMHMM & icSHAPE Result
BUMHMM Computation Pipeline
Compile C/C++ with GCC-7.2
icSHAPE data of 5S rRNA
icSHAPE data of 28S rRNA
Protocols:
icSHAPE Pipeline
Sentieon
icSHAPE 建库流程
Genome Resource
Tools:
GAP: GTF Annotation Parser
PsBL: Pan's Bioinformarics Library
SHAPE-Tools: A toolset to calculate icSHAPE and smartSHAPE score
faformat: format fasta file
shape_plot: plot single or multi-aligned icSHAPE data
paristools: tool sets to cluster/visualize PARIS data