shape_plot manual

1. show help information

[lee@lipan shape_plot]$ shape_plot -h
shape_plot - bar plot single or multi-alignment SHAPE data(0-1) 
================================================================
USAGE:
        faformat -in_sto sto_file -in_shape shape_file -out out_pdf 
                 [ -baseColor "A:#4C72B0/T:#55A868/C:#C44E52/G:#8172B2/-:#64B5CD" 
                   -shapeColor "#001c7f,#017517,#8c0900,#7600a1,#b8860b,#006374" ]

HELP:
        [input]
        -in_sto: input a aligned sto file 
        -in_shape: input a icshape file 

        [output format]
        -out: output a pdf file 

        [color]
        -baseColor: base color (default: A:#4C72B0/T:#55A868/C:#C44E52/G:#8172B2/-:#64B5CD)
        -shapeColor: shape bar color (default: "#001c7f,#017517,#8c0900,#7600a1,#b8860b,#006374")

HELP:
VERSION:
        1.101
LIB VERSION:
        Basic 1.0.0(2017-11-xx)
VERSION DATE:
        2018-01-19
COMPILE DATE:
        Jan 19 2018
AUTHOR:
        Li Pan

2. examples

shape_plot examples/multi.align examples/multi.shape examples/multi.pdf

shape_plot \
      --baseColor A:black/T:#827191 \
      --shapeColor species_1:red/species_2:blue \
      examples/multi.align \
      examples/multi.shape \
      examples/multi.pdf

Long Sequence and NULL Value is permited

shape_plot examples/long.align examples/long.shape examples/long.pdf